Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8048
Gene Symbol: CSRP3
CSRP3
0.040 AlteredExpression disease BEFREE Cleft lip (CL) has increased from 17.4% in 2014 to 34.2% in 2017, cleft palate (CP) has decreased from 32.9% to 20.2%; and CLP changed from 49.6% to 45.5% in the same period. 31795734 2019
Entrez Id: 810
Gene Symbol: CALML3
CALML3
0.040 AlteredExpression disease BEFREE Cleft lip (CL) has increased from 17.4% in 2014 to 34.2% in 2017, cleft palate (CP) has decreased from 32.9% to 20.2%; and CLP changed from 49.6% to 45.5% in the same period. 31795734 2019
Entrez Id: 23406
Gene Symbol: COTL1
COTL1
0.040 AlteredExpression disease BEFREE Cleft lip (CL) has increased from 17.4% in 2014 to 34.2% in 2017, cleft palate (CP) has decreased from 32.9% to 20.2%; and CLP changed from 49.6% to 45.5% in the same period. 31795734 2019
Entrez Id: 100505887
Gene Symbol: LINC01672
LINC01672
0.010 AlteredExpression disease BEFREE This research is trying to clarify the underlying mechanism of the modulation of miRNA transcription during the formation of cleft palate by 7T and 9.4T NMR metabolomic platforms. 31770533 2020
Entrez Id: 406899
Gene Symbol: MIR106A
MIR106A
0.010 Biomarker disease BEFREE MiR-106a-5p modulates apoptosis and metabonomics changes by TGF-β/Smad signaling pathway in cleft palate. 31770533 2020
Entrez Id: 10736
Gene Symbol: SIX2
SIX2
0.010 GeneticVariation disease BEFREE The low penetrance of clefting in the Six2 null mouse combined with the mutation in one patient with cleft palate underscores the potential combinatorial interactions of other genes in clefting. 31765609 2020
Entrez Id: 6093
Gene Symbol: ROCK1
ROCK1
0.010 Biomarker disease BEFREE ROCK1 is associated with non-syndromic cleft palate. 31715657 2020
Entrez Id: 7043
Gene Symbol: TGFB3
TGFB3
0.390 GeneticVariation disease BEFREE SMAD2 overexpression rescues the TGF-β3 null mutant mice cleft palate by increased apoptosis. 31677482 2020
Entrez Id: 4087
Gene Symbol: SMAD2
SMAD2
0.010 AlteredExpression disease BEFREE SMAD2 overexpression rescues the TGF-β3 null mutant mice cleft palate by increased apoptosis. 31677482 2020
Entrez Id: 22858
Gene Symbol: CILK1
CILK1
0.110 Biomarker disease BEFREE Using Ick-mutant mice, we investigated the mechanisms by which ICK function loss causes cleft palate and examined pharmacological rescue of the congenital defects. 31662288 2019
Entrez Id: 56999
Gene Symbol: ADAMTS9
ADAMTS9
0.010 Biomarker disease BEFREE We provide strong genetic and biochemical evidence that hydrocephaly and white spotting in B3glct mutants resulted from loss of ADAMTS20, eye abnormalities from partial reduction of ADAMTS9, and cleft palate from loss of ADAMTS20 and partially reduced ADAMTS9 function. 31600785 2019
Entrez Id: 80070
Gene Symbol: ADAMTS20
ADAMTS20
0.010 Biomarker disease BEFREE We provide strong genetic and biochemical evidence that hydrocephaly and white spotting in B3glct mutants resulted from loss of ADAMTS20, eye abnormalities from partial reduction of ADAMTS9, and cleft palate from loss of ADAMTS20 and partially reduced ADAMTS9 function. 31600785 2019
Entrez Id: 50945
Gene Symbol: TBX22
TBX22
0.490 PosttranslationalModification disease BEFREE DNA hypermethylation of Fgf16 and Tbx22 associated with cleft palate during palatal fusion. 31596367 2019
Entrez Id: 8823
Gene Symbol: FGF16
FGF16
0.010 PosttranslationalModification disease BEFREE DNA hypermethylation of Fgf16 and Tbx22 associated with cleft palate during palatal fusion. 31596367 2019
Entrez Id: 6295
Gene Symbol: SAG
SAG
0.010 Biomarker disease BEFREE Consistent with these findings, the incidence of CP in association with excessive RA signaling was reduced by administration of the Shh signaling agonist SAG (Smoothened agonist). 31591086 2019
Entrez Id: 406932
Gene Symbol: MIR140
MIR140
0.030 Biomarker disease BEFREE The role of miR-140, which had the strongest association with CP, was investigated in both human and mouse palate cells. 31589286 2019
Entrez Id: 4907
Gene Symbol: NT5E
NT5E
0.010 Biomarker disease BEFREE Four patients, who were diagnosed with velopharyngeal dysfunction without cleft palate at ENT clinic of the National Hospital Organization, Tokyo Medical Center, participated in this study. 31530426 2019
Entrez Id: 22915
Gene Symbol: MMRN1
MMRN1
0.010 GeneticVariation disease BEFREE This article will review the known ECM constituents at each stage of palatogenesis, the mechanisms of tissue reorganization and cell migration through the palatal ECM, the reciprocal relationship between the ECM and gene expression, and human syndromes with cleft palate that arise from mutations of ECM proteins and their regulators.Anat Rec, 2019. 31513730 2019
Entrez Id: 9464
Gene Symbol: HAND2
HAND2
0.020 GeneticVariation disease BEFREE All <i>Has2<sup>f/f</sup></i>;<i>Hand2-Cre</i> pups showed reduced mandible size and about 50% of them had cleft palate with disruption of palatal shelf elevation. 31509714 2019
Entrez Id: 7994
Gene Symbol: KAT6A
KAT6A
0.110 GeneticVariation disease BEFREE Among the more than 500 genes differentially expressed after loss of MOZ, 19 genes had previously been associated with cleft palates. 31340933 2019
Entrez Id: 2562
Gene Symbol: GABRB3
GABRB3
0.030 GeneticVariation disease BEFREE Cleft Palate as Distinguishing Feature in a Patient with GABRB3 Epileptic Encephalopathy. 31319422 2019
Entrez Id: 100616113
Gene Symbol: MIR4680
MIR4680
0.010 Biomarker disease BEFREE Our results indicate that miR-374a-5p, miR-4680-3p, and miR-133b regulate expression of genes that are involved in the etiology of human CP, providing insight into the association between CP-associated genes and potential targets of miRNAs in palate development. 31262291 2019
Entrez Id: 442890
Gene Symbol: MIR133B
MIR133B
0.010 Biomarker disease BEFREE Our results indicate that miR-374a-5p, miR-4680-3p, and miR-133b regulate expression of genes that are involved in the etiology of human CP, providing insight into the association between CP-associated genes and potential targets of miRNAs in palate development. 31262291 2019
Entrez Id: 442919
Gene Symbol: MIR374A
MIR374A
0.010 Biomarker disease BEFREE MicroRNA-374a, -4680, and -133b suppress cell proliferation through the regulation of genes associated with human cleft palate in cultured human palate cells. 31262291 2019
Entrez Id: 23543
Gene Symbol: RBFOX2
RBFOX2
0.010 AlteredExpression disease BEFREE Here, we demonstrate that splicing factor Rbfox2 is expressed in the neural crest cells (NCCs), and deletion of <i>Rbfox2</i> in NCCs leads to cleft palate and defects in craniofacial bone development. 31241461 2019